Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs148994006 | chr2:201810186 | A/AGGAAGCTGAGAAGCTTCCTG | 0.000471 | 191 | 13.58 | 12.73 | 11.97 | KM Plot |
| LIHC | rs1491298 | chr4:44745299 | G/A | 3.72E-5 | 190 | 15.43 | 13.7 | 3.4 | KM Plot |
| LIHC | rs1491299 | chr4:44745025 | A/G | 3.72E-5 | 190 | 15.43 | 13.7 | 3.4 | KM Plot |
| LIHC | rs1491304 | chr4:44690320 | A/T | 2.82E-6 | 192 | 3.37 | 13.55 | 16.07 | KM Plot |
| LIHC | rs1491308 | chr4:44668143 | C/T | 2.82E-6 | 192 | 3.37 | 13.55 | 16.07 | KM Plot |
| LIHC | rs1491314 | chr4:44656948 | C/T | 3.37E-6 | 191 | 3.4 | 13.35 | 16.07 | KM Plot |
| LIHC | rs1491315 | chr4:44656980 | T/C | 0.000221 | 191 | 7.43 | 13.7 | 13.85 | KM Plot |
| LIHC | rs1491317 | chr4:44659246 | T/A | 3.37E-6 | 191 | 3.4 | 13.35 | 16.07 | KM Plot |
| LIHC | rs1491318 | chr4:44662446 | G/A | 2.82E-6 | 191 | 3.4 | 13.55 | 16.07 | KM Plot |
| LIHC | rs1491319 | chr4:44662679 | C/A | 2.82E-6 | 191 | 3.4 | 13.55 | 16.07 | KM Plot |
| LIHC | rs1491321 | chr4:44663493 | A/G | 2.82E-6 | 191 | 3.4 | 13.55 | 16.07 | KM Plot |
| LIHC | rs1491322 | chr4:44663652 | A/G | 2.9E-7 | 192 | 3.03 | 13.53 | 16.6 | KM Plot |
| LIHC | rs1491327 | chr4:44713793 | C/T | 2.82E-6 | 192 | 3.37 | 13.55 | 16.07 | KM Plot |
| LIHC | rs150149238 | chr12:112340476 | CG/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs150487208 | chr2:202239024 | G/A | 0 | 189 | 13.35 | 13.38 | 0.37 | KM Plot |